Agrobacterium tumefaciens strain 1D1609

• Map 1
• T6SS gene clusters 1
• Effectors 8
• Immunity proteins 1
• Recipient susceptibility factors 0
• Regulators 0
• Accessory proteins 0

• NZ_CP026925 (chromosome)

NZ_CP026925 (chromosome)
 

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Experimental investigation has been performed.
Bioinformatics investigation has been performed

T6SS ID	Type	Organism	Replicon (Accession)	Location	Function
T6SS01103	i5	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1612910..1635897	anti-bacterial

Experimental investigation has been performed.
Bioinformatics investigation has been performed

Regulator ID	Locus tag (Gene)	Related T6SS	Regulator type	Regulatory pathway	Organism	Replicon (Accession)	Coordinates (Strand)	NCBI ID	Target (Regulation)

Experimental investigation has been performed.
Bioinformatics investigation has been performed

Effector ID	Locus tag (Gene)	Classification	Cognate immunity protein	Related T6SS	Organism	Replicon (Accession)	Coordinates (Strand)	NCBI ID
EFF01868	At1D1609_RS29810	Tae	IMU00350	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1637023..1638591 (+)	1852493397
EFF01828	At1D1609_44740 (V2a)	Tde	-	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1637023..1638591 (+)	1349686713
EFF01827	At1D1609_44690 (hcp)	-	-	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1632132..1632608 (+)	1349686708
EFF01843	At1D1609_RS18895	-	-	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	713242..715506 (-)	1150861261
EFF01844	At1D1609_RS22460	-	-	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1475318..1477582 (+)	1352522504
EFF01845	At1D1609_RS23245	-	-	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1633633..1635897 (+)	1352522526
EFF01846	At1D1609_RS26290	-	-	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	2295823..2298090 (+)	1352522879
EFF01867	At1D1609_RS22470	-	-	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1478708..1479313 (+)	1349686563

Experimental investigation has been performed.
Bioinformatics investigation has been performed

Immunity protein ID	Locus tag (Gene)	Related T6SS	Organism	Replicon (Accession)	Coordinates (Strand)	Protein GI	Cognate effector
IMU00350	At1D1609_44750 (v3a)	T6SS01103	Agrobacterium tumefaciens strain 1D1609	chromosome (NZ_CP026925)	1638588..1639688 (+)	1349686714	EFF01867

Experimental investigation has been performed.
Bioinformatics investigation has been performed

ID	Locus tag (Gene)	Organism	Replicon (Accession)	Coordinates (Strand)	Protein GI	Response to T6SS attack	Known or putative function

Experimental investigation has been performed.
Bioinformatics investigation has been performed

Accessory protein ID	Locus tag (Gene)	Related T6SS	Type	Organism	Replicon (Accession)	Coordinates (Strand)	Protein GI	Related structure protein	Related effector